Tools for Sequence Bioinformatics

Focused on bioinformatics solutions for sequence analysis, this cluster evaluates various tools for interpreting genomic data and enhancing data visualization methods.

bioinformatics tools
sequence visualization
genomic data
analysis methods
enrichment analysis

79,122 papers

Parent topic: Genomic and Proteomic Research

AI-assisted content · The overview, paper groupings, and influence analysis on this page are AI-generated. They are intended as a starting point for exploring the field and may contain inaccuracies. Report an error

Papers Over Time

19201930194019501960197019801990200020102020

Top Papers

Gene Set Enrichment Analysis: A Knowledge-Based Approach For Interpreting Genome-Wide Expression Profiles

2005 · 41,565 citations

STAR: Ultrafast Universal RNA-seq Aligner

2012 · 39,814 citations

Cytoscape: A Software Environment For Integrated Models Of Biomolecular Interaction Networks

2003 · 38,595 citations

MUSCLE: Multiple Sequence Alignment With High Accuracy And High Throughput

2004 · 37,219 citations

MAFFT Multiple Sequence Alignment Software Version 7: Improvements In Performance And Usability

2013 · 34,356 citations

Systematic And Integrative Analysis Of Large Gene Lists Using DAVID Bioinformatics Resources

2008 · 30,859 citations

Basic Local Alignment Search Tool

1990 · 23,012 citations

Ultrafast And Memory-Efficient Alignment Of Short DNA Sequences To The Human Genome

2009 · 19,179 citations

Search And Clustering Orders Of Magnitude Faster Than BLAST

2010 · 17,540 citations

HTSeq--a Python Framework To Work With High-Throughput Sequencing Data

2014 · 17,418 citations

Cluster Analysis And Display Of Genome-Wide Expression Patterns

1998 · 13,819 citations

Differential Expression Analysis For Sequence Count Data

2010 · 13,277 citations

Bioinformatics Enrichment Tools: Paths Toward The Comprehensive Functional Analysis Of Large Gene Lists

2008 · 12,453 citations

FastTree 2 – Approximately Maximum-Likelihood Trees For Large Alignments

2010 · 11,594 citations

Predicting Transmembrane Protein Topology With A Hidden Markov Model: Application To Complete genomes11Edited By F. Cohen

2001 · 11,104 citations

TopHat: Discovering Splice Junctions With RNA-Seq

2009 · 10,543 citations

Minimap2: Pairwise Alignment For Nucleotide Sequences

2018 · 9,990 citations

StringTie Enables Improved Reconstruction Of A Transcriptome From RNA-seq Reads

2015 · 9,619 citations

GSVA: Gene Set Variation Analysis For Microarray And RNA-Seq Data

2013 · 9,425 citations

Cd-hit: A Fast Program For Clustering And Comparing Large Sets Of Protein Or Nucleotide Sequences

2006 · 9,021 citations