RNA-Seq Data Analysis Tools

Research in this cluster focuses on tools and methodologies for the analysis of RNA-Seq data. It aims to enhance differential expression analysis and improve insights into transcriptomics.

RNA-Seq
differential expression
transcriptomics
bioinformatics
data analysis tools

76,200 papers

Parent topic: Genomic and Proteomic Research

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Papers Over Time

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Top Papers

Moderated Estimation Of Fold Change And Dispersion For RNA-seq Data With DESeq2

2014 · 66,689 citations

Limma Powers Differential Expression Analyses For RNA-sequencing And Microarray Studies

2015 · 28,689 citations

clusterProfiler: An R Package For Comparing Biological Themes Among Gene Clusters

2012 · 23,957 citations

RSEM: Accurate Transcript Quantification From RNA-Seq Data With Or Without A Reference Genome

2011 · 16,895 citations

New Algorithms And Methods To Estimate Maximum-Likelihood Phylogenies: Assessing The Performance Of PhyML 3.0

2010 · 15,212 citations

STRING V11: Protein–Protein Association Networks With Increased Coverage, Supporting Functional Discovery In Genome-Wide Experimental Datasets

2018 · 13,341 citations

MolProbity: All-Atom Structure Validation For Macromolecular Crystallography

2009 · 12,954 citations

Fast, Scalable Generation Of High‐Quality Protein Multiple Sequence Alignments Using Clustal Omega

2011 · 12,642 citations

The Cambridge Structural Database: A Quarter Of A Million Crystal Structures And Rising

2002 · 10,931 citations

Bioconductor: Open Software Development For Computational Biology And Bioinformatics.

2004 · 10,688 citations

Differential Gene And Transcript Expression Analysis Of RNA-seq Experiments With TopHat And Cufflinks

2012 · 10,618 citations

RNA-Seq: A Revolutionary Tool For Transcriptomics

2009 · 10,303 citations

SWISS-MODEL And The Swiss-Pdb Viewer: An Environment For Comparative Protein Modeling

1997 · 10,239 citations

Integrating Single-Cell Transcriptomic Data Across Different Conditions, Technologies, And Species

2018 · 10,173 citations

The RAST Server: Rapid Annotations Using Subsystems Technology

2008 · 9,875 citations

STRUCTURE HARVESTER: A Website And Program For Visualizing STRUCTURE Output And Implementing The Evanno Method

2011 · 9,756 citations

Fast And Sensitive Protein Alignment Using DIAMOND

2014 · 9,633 citations

TBtools: An Integrative Toolkit Developed For Interactive Analyses Of Big Biological Data

2020 · 9,141 citations

Circos: An Information Aesthetic For Comparative Genomics

2009 · 8,863 citations

The Phyre2 Web Portal For Protein Modeling, Prediction And Analysis

2015 · 8,498 citations