Prokaryotic Genome Annotation Techniques

This cluster encompasses tools and methods for the annotation of prokaryotic genomes. It includes rapid annotation systems and gene databases that support ecological and evolutionary studies.

genome annotation
prokaryotic databases
ecological genomics
gene prediction
annotation tools

30,550 papers

Parent topic: Genomic and Proteomic Research

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Papers Over Time

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Top Papers

Prokka: Rapid Prokaryotic Genome Annotation

2014 · 13,657 citations

Greengenes, A Chimera-Checked 16S rRNA Gene Database And Workbench Compatible With ARB

2006 · 9,189 citations

Unicycler: Resolving Bacterial Genome Assemblies From Short And Long Sequencing Reads

2017 · 6,055 citations

Towards A Natural System Of Organisms: Proposal For The Domains Archaea, Bacteria, And Eucarya.

1990 · 5,231 citations

An Improved Greengenes Taxonomy With Explicit Ranks For Ecological And Evolutionary Analyses Of Bacteria And Archaea

2011 · 4,303 citations

Toward An Ecological Classification Of Soil Bacteria

2007 · 3,820 citations

The SEED And The Rapid Annotation Of Microbial Genomes Using Subsystems Technology (RAST)

2013 · 3,734 citations

Distribution Of Repetitive DNA Sequences In Eubacteria And Application To Finerpriting Of Bacterial Enomes

1991 · 2,724 citations

Identifying Bacterial Genes And Endosymbiont DNA With Glimmer

2007 · 2,686 citations

(Figure 5) Distribution And Relative Abundances Of Microbiota Recovered From The Jurassic Section Of DSDP Hole 79-547B

1984 · 2,633 citations

Towards A Taxonomic Coherence Between Average Nucleotide Identity And 16S rRNA Gene Sequence Similarity For Species Demarcation Of Prokaryotes

2014 · 2,556 citations

Complete Genome Sequence Of The Methanogenic Archaeon, Methanococcus Jannaschii

1996 · 2,532 citations

Compilation And Analysis ofEscherichia Colipromoter DNA Sequences

1983 · 2,440 citations

Carbon And Hydrogen Isotope Systematics Of Bacterial Formation And Oxidation Of Methane

1999 · 2,431 citations

Isolation Of An Autotrophic Ammonia-Oxidizing Marine Archaeon

2005 · 2,383 citations

Archaea In Coastal Marine Environments.

1992 · 2,279 citations

On The Gonotheca Of Egmundella Producta (G.O. Sars, 1874) N. Comb. (Cnidaria, Hydrozoa)

2016 · 2,111 citations

Archaea Predominate Among Ammonia-Oxidizing Prokaryotes In Soils

2006 · 2,073 citations

Uniting The Classification Of Cultured And Uncultured Bacteria And Archaea Using 16S rRNA Gene Sequences

2014 · 2,013 citations

Ubiquity And Diversity Of Ammonia-Oxidizing Archaea In Water Columns And Sediments Of The Ocean

2005 · 2,004 citations