Microbial Community Analysis Techniques

This area centers on methods for analyzing microbial communities using high-throughput sequencing and bioinformatics. It focuses on tools and software for evaluating microbial diversity.

microbial communities
sequencing
bioinformatics
diversity analysis
software tools

272,806 papers

Parent topic: Infectious Disease and Immunology

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Papers Over Time

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Top Papers

QIIME Allows Analysis Of High-Throughput Community Sequencing Data

2010 · 29,351 citations

Introducing Mothur: Open-Source, Platform-Independent, Community-Supported Software For Describing And Comparing Microbial Communities

2009 · 17,636 citations

UPARSE: Highly Accurate OTU Sequences From Microbial Amplicon Reads

2013 · 13,101 citations

Profiling Of Complex Microbial Populations By Denaturing Gradient Gel Electrophoresis Analysis Of Polymerase Chain Reaction-Amplified Genes Coding For 16S rRNA

1993 · 9,380 citations

CheckM: Assessing The Quality Of Microbial Genomes Recovered From Isolates, Single Cells, And Metagenomes

2015 · 8,517 citations

Predictive Functional Profiling Of Microbial Communities Using 16S rRNA Marker Gene Sequences

2013 · 7,476 citations

Ultra-high-throughput Microbial Community Analysis On The Illumina HiSeq And MiSeq Platforms

2012 · 7,204 citations

UniFrac: A New Phylogenetic Method For Comparing Microbial Communities

2005 · 6,658 citations

Introducing EzBioCloud: A Taxonomically United Database Of 16S rRNA Gene Sequences And Whole-Genome Assemblies

2017 · 6,172 citations

Phylogenetic Identification And In Situ Detection Of Individual Microbial Cells Without Cultivation

1995 · 5,357 citations

Silver Nanoparticles As Antimicrobial Agent: A Case Study On E. Coli As A Model For Gram-negative Bacteria

2004 · 4,858 citations

Introducing EzTaxon-e: A Prokaryotic 16S rRNA Gene Sequence Database With Phylotypes That Represent Uncultured Species

2012 · 4,851 citations

An Integrated Procedure For The Extraction Of Bacterial Isoprenoid Quinones And Polar Lipids

1984 · 4,828 citations

Microbial Biofilms

1995 · 4,480 citations

Universal Chemical Assay For The Detection And Determination Of Siderophores.

1987 · 4,416 citations

The Diversity And Biogeography Of Soil Bacterial Communities

2006 · 4,309 citations

Biofilms: An Emergent Form Of Bacterial Life

2016 · 4,185 citations

Complete Genome Sequence Of Pseudomonas Aeruginosa PAO1, An Opportunistic Pathogen

2000 · 3,849 citations

Optimizing Taxonomic Classification Of Marker-Gene Amplicon Sequences With QIIME 2’S Q2-Feature-Classifier Plugin

2018 · 3,813 citations

Combination Of 16S rRNA-targeted Oligonucleotide Probes With Flow Cytometry For Analyzing Mixed Microbial Populations

1990 · 3,464 citations