Biomedical Text Mining and Ontologies

This research sub-field focuses on the application of text mining techniques to extract meaningful insights from biomedical literature. It also involves the development and utilization of ontologies to standardize and integrate knowledge across various biomedical datasets, facilitating better data sharing and interpretation in the life sciences.

text mining
ontologies
biomedical literature
data integration
knowledge representation
information retrieval
semantic web
natural language processing

107,106 papers

Parent topic: Biomedical Informatics

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Sub-topics

Biomedical Text Mining and Ontologies

This research cluster focuses on the development and application of natural language processing techniques for extracting meaningful information from biomedical literature. It includes the creation of annotated corpora, domain-specific vocabularies, and ontologies that facilitate data integration and knowledge retrieval in the life sciences.

96289 papers

Papers Over Time

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Top Papers

Finding Scientific Topics

2004 · 4,091 citations

Towards A Knowledge-Based Human Protein Atlas

2010 · 2,120 citations

The OBO Foundry: Coordinated Evolution Of Ontologies To Support Biomedical Data Integration

2007 · 1,797 citations

The Automatic Creation Of Literature Abstracts

1958 · 1,746 citations

AmiGO: Online Access To Ontology And Annotation Data

2008 · 1,648 citations

A New Academic Word List

2000 · 1,637 citations

Identifying Biological Themes Within Lists Of Genes With EASE

2003 · 1,633 citations

The Generation Of A Unique Machine Description For Chemical Structures-A Technique Developed At Chemical Abstracts Service.

1965 · 1,098 citations

GOstat: Find Statistically Overrepresented Gene Ontologies Within A Group Of Genes

2004 · 1,070 citations

Identifying Personal Genomes By Surname Inference

2013 · 910 citations

DOSE: An R/Bioconductor Package For Disease Ontology Semantic And Enrichment Analysis

2014 · 902 citations

The Human Phenotype Ontology In 2021

2020 · 842 citations

Effective Mapping Of Biomedical Text To The UMLS Metathesaurus: The MetaMap Program.

2001 · 807 citations

Disease Ontology: A Backbone For Disease Semantic Integration

2011 · 776 citations

LDAvis: A Method For Visualizing And Interpreting Topics

2014 · 752 citations

Relations In Biomedical Ontologies.

2005 · 703 citations

GENIA Corpus--A Semantically Annotated Corpus For Bio-Textmining

2003 · 692 citations

A Series Of PDB Related Databases For Everyday Needs

2010 · 678 citations

The Human Phenotype Ontology In 2017

2016 · 664 citations

Investigating Semantic Similarity Measures Across The Gene Ontology: The Relationship Between Sequence And Annotation

2003 · 636 citations