Biomedical Ontologies and Textual Models

This cluster investigates the development and application of ontologies in the biomedical domain as well as the use of language models for processing and understanding biomedical texts. The emphasis is on creating standardized terminologies for better data interoperability.

biomedical ontologies
language models
text mining
bioinformatics
data interoperability
semantic web
UMLS

5,373 papers

Parent topic: Bioinformatics and Healthcare AI

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Papers Over Time

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Top Papers

The Gene Ontology Resource: 20 Years And Still GOing Strong

2018 · 3,763 citations

BioBERT: A Pre-Trained Biomedical Language Representation Model For Biomedical Text Mining

2019 · 3,273 citations

The Unified Medical Language System (UMLS): Integrating Biomedical Terminology

2004 · 2,918 citations

Towards A Knowledge-Based Human Protein Atlas

2010 · 2,120 citations

The Gene Ontology Knowledgebase In 2023

2023 · 965 citations

A Reference Ontology For Biomedical Informatics: The Foundational Model Of Anatomy

2003 · 811 citations

Effective Mapping Of Biomedical Text To The UMLS Metathesaurus: The MetaMap Program.

2001 · 807 citations

Relations In Biomedical Ontologies.

2005 · 703 citations

The Gene Ontology Project In 2008

2007 · 668 citations

Bulk Tissue Cell Type Deconvolution With Multi-Subject Single-Cell Expression Reference

2019 · 637 citations

Semantic Similarity In Biomedical Ontologies

2009 · 618 citations

A Literature Network Of Human Genes For High-Throughput Analysis Of Gene Expression

2001 · 594 citations

BioPortal: Enhanced Functionality Via New Web Services From The National Center For Biomedical Ontology To Access And Use Ontologies In Software Applications

2011 · 572 citations

Disease Ontology 2015 Update: An Expanded And Updated Database Of Human Diseases For Linking Biomedical Knowledge Through Disease Data

2014 · 488 citations

A Gene Network For Navigating The Literature

2004 · 435 citations

A New Methodology For Constructing A Publication-Level Classification System Of Science

2012 · 433 citations

The Gene Ontology In 2010: Extensions And Refinements

2009 · 382 citations

BioCreative V CDR Task Corpus: A Resource For Chemical Disease Relation Extraction

2016 · 374 citations

BioWordVec, Improving Biomedical Word Embeddings With Subword Information And MeSH

2019 · 283 citations

BioInfer: A Corpus For Information Extraction In The Biomedical Domain

2007 · 279 citations