Bioinformatics Tool Development

This research sub-field focuses on creating and enhancing computational tools for bioinformatics, particularly in the areas of data analysis and interpretation in biological contexts. It encompasses a variety of methodologies and applications such as text mining, data processing, and statistical modeling to facilitate the management and analysis of biological data.

bioinformatics

data analysis

text mining

software development

computational biology

algorithm design

mass spectrometry

genomic annotations

48,566 papers

Parent topic: Data Science and Technologies

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Sub-topics

Bioinformatics and Text Mining Tools

This research cluster focuses on the development of tools and methodologies for bioinformatics data analysis, including sequence alignment and gene annotation. It encompasses various computational techniques for text mining and data cleaning which facilitate the extraction and analysis of biological information from collections and databases.

28570 papers

Papers Over Time

192019401960198020002020

Top Papers

The RAST Server: Rapid Annotations Using Subsystems Technology

2008 · 9,875 citations

SExtractor: Software For Source Extraction

1996 · 8,460 citations

Profile Hidden Markov Models

1998 · 4,649 citations

An Algorithm For Suffix Stripping

1980 · 4,346 citations

XCMS: Processing Mass Spectrometry Data For Metabolite Profiling Using Nonlinear Peak Alignment, Matching, And Identification

2006 · 4,201 citations

Base-Calling Of Automated Sequencer Traces Using Phred. II. Error Probabilities

1998 · 3,798 citations

CPC: Assess The Protein-Coding Potential Of Transcripts Using Sequence Features And Support Vector Machine

2007 · 2,299 citations

Orthogonal Projections To Latent Structures (O-PLS)

2002 · 1,948 citations

Pindel: A Pattern Growth Approach To Detect Break Points Of Large Deletions And Medium Sized Insertions From Paired-End Short Reads

2009 · 1,799 citations

HMMER Web Server: 2018 Update

2018 · 1,747 citations

2017 · 1,571 citations

Similarity Network Fusion For Aggregating Data Types On A Genomic Scale

2014 · 1,557 citations

SMS: Smart Model Selection In PhyML

2017 · 1,544 citations

A Fast String Searching Algorithm

1977 · 1,496 citations

Mayo Clinical Text Analysis And Knowledge Extraction System (cTAKES): Architecture, Component Evaluation And Applications

2010 · 1,391 citations

Towards Integrative Taxonomy

2005 · 1,387 citations

A Classification System For Seed Dormancy

2004 · 1,319 citations

Suffix Arrays: A New Method For On-Line String Searches

1993 · 1,201 citations

Ensembl BioMarts: A Hub For Data Retrieval Across Taxonomic Space

2011 · 1,164 citations

Cultivar Evaluation And Mega-Environment Investigation Based On The GGE Biplot

2000 · 1,109 citations